Supports both bulk and single-cell RNA-seq count matrices. Bulk RNA-seq
counts are written to disk as comma separated values ("
RNA-seq counts are written to disk in MatrixMarket format ("
with the sample barcodes ("
.COLNAMES"), and gene identifiers
writeCounts(..., dir = getOption("acid.export.dir", default = "."), compress = getOption("acid.export.compress", default = FALSE))
Symbols. Unquoted object names containing count matrices.
Automatic gzip compression is offered as a user-defined option. This setting is enabled by default to save disk space. Note that the readr package, built into RStudio, now natively supports compressed files.
This function is desired for interactive use and interprets object names using non-standard evaluation.
#>#>## Clean up. unlink("example", recursive = TRUE)